Hey,
One possibility: if you have not coregistered all of you fieldmaps with
the scan you used as reference for realignement then you can get some
funky results like that.
Hope it helps
RĂ©mi
On 01/06/2019 12:32, Jamini Thakrar wrote:
> I have pre-processed all my images using the method Maria Ironside details in her youtube video https://www.youtube.com/watch?v=Y4i1FFgWz_g, including fieldmapping, however one patient's images are appearing with a big chunk of the brain missing after pre-processing. What could be leading to this? I am still very new to using SPM so any help on this is really appreciated! Thank you in advance!
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