Dear Jordi,
the use of the batch shell scripts is not yet supported in the deployed (compiled) version of CAT12.m This will be added in the next release.
Best,
Christian
On Sat, 15 Jun 2019 17:02:30 +0200, Jordi Huguet <[log in to unmask]> wrote:
>Jordi Huguet <[log in to unmask]>
>4:58 PM (3 minutes ago)
>to SPM
>Dear all,
>
>I am trying to run CAT12 toolbox (r1450) in a HPC environment using the
>standalone SPM version (SPM12 r7478) for Matlab MCR R2018b.
>However, my first attempt at running it for segmenting a single image (via
>'cat_batch_cat.sh' script) did not succeed. See log file content below:
>
>----------------------------------
>> Sat Jun 15 16:16:36 CEST 2019
>> ----------------------------------
>> Calling string of this batch:
>> /opt/packages/spm/12-r7487/spm12_mcr/toolbox/cat12/cat_batch_cat.sh -fg
>> -nojvm -nojvm -m -m spm12 /home/jhuguet/scratch/cat12/INPUT/mri.nii
>> MATLAB command of this batch:
>> cat_batch_cat('/tmp/cat_185160','')
>> Shell command of this batch:
>> /home/jhuguet/scratch/cat12/INPUT/mri.nii
>> nohup: ignoring input
>> Error using spm_cli (line 56)
>> Cannot find module -nodisplay.
>> Error in spm_cli (line 56)
>> Error in spm_standalone (line 157)
>
>
>Any ideas of what am I missing or doing wrong?
>
>Many thanks,
>Jordi
>
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