Hello - I am running EPI_REG using the --nofmapreg option (I have field maps that are already co-registered to my target T1 image).
I am surprised to see that when the script runs, that it generates a "Registering fieldmap to structural" message as it runs.
I expected this message to be absent, if the script was indeed skipping the fm --> t1 coreg step. This is the case for other flags that ask epi_reg to skip a step... for example, If I supply a previously generated white matter segmentation via --wmseg=, it does not output the typical "Performing FAST ..." message.
In summary, I am curious if epi_reg is actually skipping the field map coregistration step when I specify the --nofmapreg option.
Thank you
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