Dear FSL experts,
I want to get metric value of certain ROI tract, say CC, I used the following scripts:
1)fslmaths /usr/local/fsl/data/atlases/JHU/JHU-ICBM-labels-1mm.nii.gz -thr 5 -uthr 5 -bin splenium.nii.gz;
2)fslmaths splenium.nii.gz -mas mean_FA_skeleton_mask.nii.gz -bin spleniummask.nii.gz;
3)fslmeants -i all_FA_skeletonised.nii.gz -o FA_splenium -m spleniummask.nii.gz .
Is this right?
And
Colud I get all 48 tract metric value together not one by one like mentioned above?
Thanks so much.
Best regards.
Baixiong
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|