Dear Jesper,
We highly appreciate your time for this. I've uploaded the tar file to the given link.
The tar file includes raw data, eddy 5.1.1 with repol & no repol and eddy 6.0.1 with repol & no repol.
*The dropout slice from the screen capture is at dwi volume 8, z=19.
Command that we used for eddy 6.0.1 without repol
eddy_openmp --imain=subject.nii.gz --mask=subject_mask.nii.gz --index=index.txt --acqp=acqp.txt --bvecs=subject.bvec --bvals=subject.bval --data_is_shelled --out=eddy_6_no_option
Command that we used for eddy 6.0.1 with repol
eddy_openmp --imain=subject.nii.gz --mask=subject_ask.nii.gz --index=index.txt --acqp=acqp.txt --bvecs=subject.bvec --bvals=subject.bval --data_is_shelled --repol --out=eddy_6_repol
Although this eddys were ran on a linux machine, the same issue is present for eddy 6.0.1 in my mac.
(Please let me know if the uploading didn't go well)
Many thanks,
Kevin
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