Hi Jesper,
Thank you for getting back to me.
Here is a dropbox link of screen shots of a slice from our data.
https://www.dropbox.com/sh/blg5sbyqd9jg4xf/AAApqiFA11WsfRufHAtjQ0NTa?dl=0
(I could not attach images due to the size limit)
Raw DTI - shows a slice with signal attenuation
Eddy 5.0.11 with repol - fixes this slice
Eddy 5.0.11 with no repol - does not fix this slice
Eddy 6.0.1 with repol - fixes this slice
Eddy 6.0.1 with no repol - also fixes this slice
As you can see in the screen capture, there is huge difference in the slice between 5.0.11 vs 6.0.1.
If 6.0.1 without "repol option" is not replaceing the outliers, would you please let us know what is happening here?
(We did not use other eddy options here)
Best wishes,
Kevin
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