Hi, Paul.
Thank you for your quick reply.
I used FSL 6.0.1 version, and I believe the installation completed successfully. And after tbss_1_preproc *.nii.gz. It creates two folder named FA and origdata, but unfortunately there's nothing in it, and the nii documents are outside these two files. And I knew that they actually should be all in the file named origdata. But when I used tbss_1_preproc *.nii, something different happened. It still creates the same two folder named FA and origdata. There is target.nii.gz and tbss_logs in FA, and the original data are now in origdata file. But when I type in tbss_2_reg -T, the result is still the same. What do you think should be the problem?
[fsluser@localhost ~]$ cd mytbss
[fsluser@localhost mytbss]$ ls
a_fa.nii d_fa.nii g_fa.nii j_fa.nii m_fa.nii P_fa.nii s_fa.nii
b_fa.nii e_fa.nii h_fa.nii k_fa.nii n_fa.nii q_fa.nii t_fa.nii
c_fa.nii f_fa.nii i_fa.nii l_fa.nii o_fa.nii r_fa.nii
[fsluser@localhost mytbss]$ tbss_1_preproc *.nii.gz
Now running "slicesdir" to generate report of all input images
-e <thr> : use the specified threshold for edges (if >0 use this proportion of max-min, if <0, use the absolute value)
-S : output every second axial slice rather than just 9 ortho slices
[fsluser@localhost mytbss]$ ls
a_fa.nii d_fa.nii f_fa.nii i_fa.nii l_fa.nii o_fa.nii q_fa.nii t_fa.nii
b_fa.nii e_fa.nii g_fa.nii j_fa.nii m_fa.nii origdata r_fa.nii
c_fa.nii FA h_fa.nii k_fa.nii n_fa.nii P_fa.nii s_fa.nii
[fsluser@localhost mytbss]$ cd FA
[fsluser@localhost FA]$ ls
[fsluser@localhost FA]$ cd ..
[fsluser@localhost mytbss]$ cd origdata
[fsluser@localhost origdata]$ ls
[fsluser@localhost origdata]$[fsluser@localhost origdata]$ cd ..
[fsluser@localhost mytbss]$ tbss_2_reg -T
Task file (.commands) does not exist
[fsluser@localhost mytbss]$ ls
a_fa.nii d_fa.nii f_fa.nii i_fa.nii l_fa.nii o_fa.nii q_fa.nii t_fa.nii
b_fa.nii e_fa.nii g_fa.nii j_fa.nii m_fa.nii origdata r_fa.nii
c_fa.nii FA h_fa.nii k_fa.nii n_fa.nii P_fa.nii s_fa.nii
[fsluser@localhost mytbss]$ tbss_1_preproc *.nii
processing P_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing a_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing b_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing c_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing d_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing e_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing f_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing g_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing h_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing i_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing j_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing k_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing l_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing m_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing n_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing o_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing q_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing r_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing s_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
processing t_fa
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslhd: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
dc: stack empty
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/fslmaths: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
Now running "slicesdir" to generate report of all input images
-e <thr> : use the specified threshold for edges (if >0 use this proportion of max-min, if <0, use the absolute value)
-S : output every second axial slice rather than just 9 ortho slices
[fsluser@localhost mytbss]$ ls
FA origdata
[fsluser@localhost mytbss]$ cd FA
[fsluser@localhost FA]$ ls
target.nii.gz tbss_logs
[fsluser@localhost FA]$ cd ..
[fsluser@localhost mytbss]$ cd origdata
[fsluser@localhost origdata]$ ls
a_fa.nii.gz e_fa.nii.gz i_fa.nii.gz m_fa.nii.gz q_fa.nii.gz
b_fa.nii.gz f_fa.nii.gz j_fa.nii.gz n_fa.nii.gz r_fa.nii.gz
c_fa.nii.gz g_fa.nii.gz k_fa.nii.gz o_fa.nii.gz s_fa.nii.gz
d_fa.nii.gz h_fa.nii.gz l_fa.nii.gz P_fa.nii.gz t_fa.nii.gz
[fsluser@localhost origdata]$ cd ..
[fsluser@localhost mytbss]$ tbss_2_reg -T
Task file (.commands) does not exist
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