Greetings FSL Experts,
I know this is a very basic question and I apologize in advance for my naïveté. I am new to diffusion processing in FSL and am trying to run FDT on a pilot sample of 8 subjects who were scanned on a 3T Philips Ingenia (software version 4.1.1). From what I've gathered, the index file is something I should have received from the scanner technician, however I was not given any such file (only given the acquisition parameters file). I can't seem to run Eddy without this file. Can someone explain to me what exactly this index file should contain and how I might go about getting it? Any help is very much appreciated and thank you in advance.
Best,
Stephanie Otto
Graduate Student, Cognitive and Brain Sciences Program
Department of Psychology, MSS 414/MS0296
University of Nevada, Reno
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