Dear all,
I have been attempting to download FSL from source and have run into some problems on the build.
The steps I have taken are as follows;
1)Downloaded and unpacked FSL tar file into /fslbuild
2)cd'd into fsl/etc/fslconf and opened fsl.sh
3) Removed the "#" on the lines below and saved
FSLCONFDIR=$FSLDIR/config
FSLMACHTYPE=`$FSLDIR/etc/fslconf/fslmachtype.sh`
export FSLCONFDIR FSLMACHTYPE
4) Created .bash_profile in home/Userjaj directory using gedit with these lines;
#!/bin/bash
FSLDIR=/fslbuild/fsl
. ${FSLDIR}/etc/fslconf/fsl.sh
PATH=${FSLDIR}/bin:${PATH}
export FSLDIR PATH
5) From directory /fslbuild
export FSLDIR=`pwd`/fsl
executed first the the below command executed secondly;
. ${FSLDIR}/etc/fslconf/fsl.sh
6) From directory /fslbuild
ls $FSLDIR/config/$FSLMACHTYPE
I get this error message:
ls: cannot access ' /fslbuild/fsl/config/gnu_64-gcc7. ': No such file or directory
7) As instructed cd'd into fslbuild/fsl/config
cp -r $FSLDIR/config/linux_64-gcc4.8 $FSLDIR/config/$FSLMACHTYPE
8) ls $FSLDIR/config/$FSLMACHTYPE
output:
externallibs.mk systemvars.mk
9) cd into /fslbuild/fsl
sudo ./build
The build ran for quite some time but then I get this error message;
!!ERROR in BUILD!!
Could not make the following projects successfully:
extras CiftiLib-master meshclass fslvtkio warpfns bint shapeModel MVdisc fslsurface libmeshutils newmesh DiscreteOpt FastPDlib MSMRegLib avwutils bet2 cluster fast4 feat5 film filmbabe flirt fabber_core fabber_models_asl fabber_models_cest fabber_models_dsc fabber_models_dualecho mcflirt melodic miscvis mm gps randomise siena slicetimer susan tbss fnirt fugue asl_mfree fdt first possum flameo oxford_asl qboot topup ptx2 lesions eddy MSM mist-clean
I am relatively new to this so any help you may give will be an enormous help for me.
I have provided a link to the build log below;
https://universityofcambridgecloud-my.sharepoint.com/:u:/g/personal/jaj58_cam_ac_uk/EaCYwBIAvfJOiWtH-OnCvt0BXuMdzMRC9btn3Tgav0Zg5w?e=eL5Q5P
Thanks in advance.
Kind Regards,
Jolyon
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