Hello,
I have been running mcflirt using the command line for a while.
I typically use the following command:
mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final
It has always worked properly and tonight I am getting a message that -rmsrel -rmsabs are not part of the available options for mcflirt when I am running it from the command line, but it still works from the feat gui.
Could you please let me know if there is a new equivalent option or another way to run these two options?
Thank you
Marie
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