Hi users,
I have run FSL FLIRT on a time sequence to correct for subject motion. The result is visually smoother\blurry (see attached screenshot, corrected slice on the right, input on the left). This is my first time using FLIRT and I am trying to figure out whether there is default smoothing that can be removed (i.e, not part of the motion correction algorithm). I realize that it is also possible that the output is visually different due to the transformations applied.
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