Dear Richard,
You can use our Text2Vest tool to convert between “raw” text matrix designs and the format used by our tools.
Hope this helps,
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 19 Feb 2019, at 10:44, Richard Rees <[log in to unmask]> wrote:
>
> Dear all,
>
> I'm trying to generate T1w and T2w maps using the structural data I've acquired on a 3T Seimens scanner.
>
> I'm working with very small pilot cohort of participants. So far I have 5 controls and 7 patients.
>
> I'm first processing the T1 images, and have the .nii.gz files set up as recommended in an 'analysis' directory.
> fslvbm_1_bet -N works fine.
>
> fslvbm_2_template works fine.
>
> I'm then trying to run fslvbm_3_proc.
> After listing out the images (e.g. con_3_T1_struc... pat_11_T1_struc etc), then 'Doing registrations: ID=52105' I then get the following error -
> An exception has been thrown
> design.mat is not a valid vest file
>
> Exiting
>
> My design.mat file looks like this:
> 1 0
> 1 0
> 1 0
> 1 0
> 1 0
> 0 1
> 0 1
> 0 1
> 0 1
> 0 1
> 0 1
> 0 1
>
> and design.con looks like this
> 1 -1
> -1 1
> 1 0
> 0 1
>
> Any help very gratefully appreciated.
>
> Richard
>
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