Hi Max,
You can use fslstats again, e.g.:
fslstats dti_FA -k my_mask -m
Cheers,
Paul
On 18/03/2019, Maximilian Jung-Botho
<[log in to unmask]> wrote:
> Hello there!
> I've used PROBTRACKX to display the arcuate fasciculus. I've thresholded the
> fdt_paths connectivity map in order to isolate the fiber tract (and also
> made a binarized copy), using the editor mode from fsleyes. That way, I
> already got the tract volume using the command "fslstats [my_fibertract]
> -V"
>
> Now I also would like to get information on the fractional anisotropy and
> the mean diffusivity. Can you tell me how I can manage that? I read that I
> should use my binarized fiber tract as a mask but I don't know how exactly
> (or on what) or what command I should use. Can you help me? Everything was
> entirely done in the FSL suite so far (BET, DTIFIT, BEDPOSTX, etc.)
>
> Yours
> Max
>
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