Hi FSL team,
Today I downloaded FSL 6.0.1 on a MacBook Pro with macOS Mojave Version 10.14.3. I checked the installation using the commands echo $FSLDIR (displayed the name of the directory FSL was installed in) and flirt -version (displayed FLIRT version 6.0). I then ran FEEDS, which displayed an error. I am typing the complete text output from the command ./RUN all below. Please advise as soon as possible. Also, if needed I could email the results.tar.gz file, please let me know where to send it.
Vibhas-MBP:feeds vibha$ pwd
/Users/vibha/Downloads/feeds
Vibhas-MBP:feeds vibha$ ./RUN all
FSL Evaluation and Example Data Suite v6.0.1
start time = Thu Mar 14 00:44:18 PDT 2019
hostname = Vibhas-MBP
os = Darwin Vibhas-MBP 18.2.0 Darwin Kernel Version 18.2.0: Thu Dec 20 20:46:53 PST 2018; root:xnu-4903.241.1~1/RELEASE_X86_64 x86_64
/bin/rm -rf /Users/vibha/Downloads/feeds/results ; mkdir /Users/vibha/Downloads/feeds/results
Starting PRELUDE & FUGUE at Thu Mar 14 00:44:18 PDT 2019
% error = 0.0
% error = 0.0
Starting SUSAN at Thu Mar 14 00:44:19 PDT 2019
% error = 0.03
Starting SIENAX (including testing BET and FLIRT and FAST) at Thu Mar 14 00:45:07 PDT 2019
checking error on BET:
% error = 0.0
checking error on FLIRT:
% error = 0.08
checking error on FAST:
checking error on single-image binary segmentation:
% error = 0.37
checking error on partial volume images:
% error = 0.29
% error = 0.41
% error = 0.29
checking error on SIENAX volume outputs:
% error = 0.03
% error = 0.11
% error = 0.3
% error = 0.13
% error = 0.16
Starting BET2 at Thu Mar 14 00:48:18 PDT 2019
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
% error = 0.12
% error = 0.26
% error = 0.31
Starting FEAT at Thu Mar 14 00:50:34 PDT 2019
checking error on filtered functional data:
% error = 0.38
checking error on raw Z stat images:
% error = 0.46
% error = 0.29
% error = 0.4
checking error on thresholded Z stat images:
% error = 0.44
% error = 0.38
% error = 0.46
checking error on registration images:
% error = 0.0
% error = 0.02
checking error on position of largest cluster of Talairached zfstat1:
% error = 0.0
% error = 0.02
% error = 0.01
% error = 0.05
% error = 0.16
% error = 0.02
Starting MELODIC at Thu Mar 14 00:52:45 PDT 2019
child killed: SIGABRT
while executing
"fsl:exec "${FSLDIR}/bin/melodic -i $FEEDSDIR/data/fmri -o $FEEDSDIR/results/fmri.ica --tr=3 --seed=2""
invoked from within
"if { $feeds(melodic) } {
puts "\nStarting MELODIC at [ exec date ]"
fsl:exec "${FSLDIR}/bin/melodic -i $FEEDSDIR/data/fmri -o $FEEDSDIR/results/fmri..."
(file "./RUN" line 344)
Vibhas-MBP:feeds vibha$ [B
Thanks,
Vibha
(UCLA)
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