Dear FSL's experts,
I'm re-posting this message that I think got lost.
I would like to register some EPI to the T1 that was collected in a separate session, keeping the original native resolution. I used ApplyXFM:
/usr/share/fsl/5.0/bin/fslcreatehd 256 256 192 1 3 3 3 1 0 0 0 16 func_data_ApplyXFM_Nearest_anatFov_tmp.nii.gz ; /usr/share/fsl/5.0/bin/flirt -in /home/francesca/Desktop/sub3/sub-03_ses-imageryTest01_func_sub-03_ses-imageryTest01_task-imagery_run-01_bold.feat/filtered_func_data.nii.gz -applyxfm -init /home/francesca/Desktop/sub3/sub-03_ses-imageryTest01_func_sub-03_ses-imageryTest01_task-imagery_run-01_bold.feat/reg/example_func2highres.mat -out prova_ApplyXFM_Nearest_anatFov -paddingsize 0.0 -interp nearestneighbour -ref func_data_ApplyXFM_Nearest_anatFov_tmp
I would like to keep the original FoV of the functional data that was 64 64 50 (and not 256 256 192). However, when I keep these original parameters, the brain looks partially cut. Is there a solution to this problem? Maybe I'm not running correctly ApplyXFM...
Thank you!
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