Perhaps what you tried initially would work if you took out the report
option and then correlated the components timecourses with the design
outside of melodic.
Matt.
On 2/6/19, 7:33 PM, "FSL - FMRIB's Software Library on behalf of Leonardo
Tozzi" <[log in to unmask] on behalf of [log in to unmask]> wrote:
>I see. In my case, what I am especially interested in is to understand
>which components are correlated with my design and my contrasts.
>Would you know of a way to compute that with the outputs of MELODIC?
>Thank you,
>
>
>
>On Thu, 7 Feb 2019 00:55:02 +0000, Glasser, Matthew <[log in to unmask]>
>wrote:
>
>>I didn�t notice the first time where the error was. I don�t think that
>>melodic reports are quite compatible with CIFTI.
>>
>>Matt.
>>
>>On 2/6/19, 6:49 PM, "FSL - FMRIB's Software Library on behalf of Leonardo
>>Tozzi" <[log in to unmask] on behalf of [log in to unmask]> wrote:
>>
>>>The command is:
>>>
>>>melodic -i images_testcif.txt -o allsubs_test_cifti --report -d 25 -v
>>>--CIFTI
>>>
>>>The MELODIC log says:
>>>
>>>Sorting IC maps
>>>
>>>Writing results to :
>>> allsubs_test_cifti/melodic_Tmodes
>>> allsubs_test_cifti/melodic_mix
>>> allsubs_test_cifti/melodic_FTmix
>>> allsubs_test_cifti/melodic_ICstats
>>> allsubs_test_cifti/mask
>>>...done
>>>Creating report index page ...done
>>>
>>>
>>>Running Mixture Modelling on Z-transformed IC maps ...
>>> IC map 1 ...
>>> calculating mixture-model fit
>>> re-scaling spatial maps ...
>>> thresholding ...
>>> alternative hypothesis test at p > 0.5
>>> creating report page ... Image Exception : #4 :: Incompatible number
>>>of valid voxels and matrix columns in setmatrix()
>>>
>>>Incompatible number of valid voxels and matrix columns in setmatrix()
>>>
>>>
>>>
>>>
>>>On Thu, 7 Feb 2019 00:39:12 +0000, Glasser, Matthew <[log in to unmask]>
>>>wrote:
>>>
>>>>Repost the command and try to keep the prior replies below in the
>>>>e-mail.
>>>>
>>>>Matt.
>>>>
>>>>On 2/6/19, 6:36 PM, "FSL - FMRIB's Software Library on behalf of
>>>>Leonardo
>>>>Tozzi" <[log in to unmask] on behalf of [log in to unmask]> wrote:
>>>>
>>>>>Actually, a quick update (I should have posted this before): it throws
>>>>>the same error even without the --Tdes and --Tcon arguments.
>>>>>
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