Hello FSL experts,
I have run my dwi data through dt_recon and have obtained masked FA images for all of my subjects. In addition to running a ROI approach I wanted to run tbss on these FA images.
However, when running tbss_reg_2 the FA images seem to become poorly registered. I have a slicesdir image of the FA images before tbss_2_reg and a slicesdir image of the FA images after tbss_2_reg in PDF format if that would help however the file is to big to post on the forum.
The final tbss output mean FA images look really poor. Is there some step that I am performing that I shouldn't be doing? Is there something I need to take into account when using dt_recon created FA images with FSL's tbss pipeline.
Any help you can provide would be greatly appreciated!
Best,
Daniel
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|