Hi FSL community,
Wanted to upvote this thread as well as I also had this issue and couldn't tell why it was happening.
Mine was also on macOS High Sierra.
Have you tried running the commands Jay? For me, although I get the error message, everything was working as expected (i.e. FSL commands work as expected in both terminal and GUI, and FSLEyes works as expected).
Cheers,
Danny
________________________________________
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of SUBSCRIBE FSL Jay <[log in to unmask]>
Sent: Tuesday, February 19, 2019 7:08 AM
To: [log in to unmask]
Subject: [FSL] FSL 6.0.0 install error (MAC OS)
Hello FSL experts,
I am trying to install FSL 6.0.0 on MAC OS (High Sierra 10.13.6).
I have used the command /usr/bin/python fslinstaller.py
But i get the following error (I have tried it on OSX EL Capitan 10.11.6 but get the same error)
Please help me with a work around solution.
======================================================
[OK] FSL software installed.
Performing post install tasks
Checking for X11 windowing system (required for FSL GUIs).
[OK] X11 (required for GUIs) found
Stage 1
By installing this python distribution you agree to the license terms in
/usr/local/fsl/fslpython/LICENSE.txt
100%
Stage 2
100%
/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/fslpythonXXXX.4eUpwIOn/fslpython_miniconda_installer.log
Creating links to applications.
bin/fslview.app bin/assistant.app bin/fsleyes.app
Post install setup complete
Creating Application links...
[OK] /Applications links created/updated
[OK] Post installation setup complete
Setting up FSL software...
Traceback (most recent call last):
File "/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/tmpVN8bBr", line 2898, in <module>
do_install(options, installer_settings)
File "/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/tmpVN8bBr", line 2785, in do_install
skip=options.skip_env, matlab=with_matlab)
File "/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/tmpVN8bBr", line 2597, in configure_environment
setup_environment(fsldir, with_matlab=matlab)
File "/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/tmpVN8bBr", line 2143, in setup_environment
configure_matlab(fsldir)
File "/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/tmpVN8bBr", line 1994, in configure_matlab
(mlines, match, replace) = shell_config('matlab', fsldir)
File "/var/folders/dl/78x3523n72n0d5hygk05y7000000gp/T/tmpVN8bBr", line 1928, in shell_config
return (env_lines % (fsldir), match, replace % (fsldir))
TypeError: float argument required, not str
======================================================
Best wishes
Jay
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