Hi Kevin,
Since CCP4 v.7 there is an issue with the term Windows. I was used to run any CCP4 program from anywhere on my disks with v. 6.x but with v.7x you have to move every needed fiies to C:\CCP4\ccp4-7.0 (or something like this): Indeed where the shortcut of the CCP4 consol is located.
Some environment variables are not well set. Hum... I have to confess I wanted to do that during some spare time. The trouble is I never found spare time since the v.7.0 release...
HTH and all the best,
Philippe
Philippe BENAS, Ph.D.
ARN UPR 9002 CNRS
IBMC Strasbourg
15, rue René Descartes
F-67084 STRASBOURG cedex
+33.3.8841.7109
E-mails: [log in to unmask], [log in to unmask]
URLs: http://www-ibmc.u-strasbg.fr/ , http://www-ibmc.u-strasbg.fr/spip-arn/
--------------------------------------------
En date de : Mer 13.2.19, Kevin Cowtan <[log in to unmask]> a écrit :
Objet: [ccp4bb] Can anyone run refmac from the WINDOWS command prompt?
À: [log in to unmask]
Date: Mercredi 13 février 2019, 12h29
Hi! Can anyone run refmac from the
WINDOWS command prompt?
I've been experimenting with
various combinations of environment variables, but I always
get an error. The one instance of this error on google is an
unanswered CCP4BB question.
Dictionary path has not
been definedCheck the environment
variable CLIBD_MONCurrent value of
CLIBD_MON is
C:\Apps\CCP4-7\7.0\lib\data\monomersIt should be set to wherever_dict/dic/===> Error: Wrong path for the dictionary
files<B><FONT
COLOR="#FF0000"><!--SUMMARY_BEGIN--> Refmac: Wrong path for the dictionary
files Refmac: Wrong path for the
dictionary files
The directory
C:\Apps\CCP4-7\7.0\lib\data\monomers
contains the following:
Directory of
C:\Apps\CCP4-7\7.0\lib\data\monomers
12/02/2019 15:42 <DIR>
.12/02/2019 15:42 <DIR>
..12/02/2019 15:38 <DIR>
012/02/2019 15:39 <DIR>
112/02/2019 15:39 <DIR>
212/02/2019 15:39
<DIR> 312/02/2019 15:39
<DIR> 412/02/2019
15:39 <DIR>
512/02/2019 15:39 <DIR>
612/02/2019 15:39 <DIR>
712/02/2019 15:40 <DIR>
812/02/2019 15:40 <DIR>
912/02/2019 15:40
<DIR> a12/02/2019 15:40
<DIR> b12/02/2019
15:40 <DIR>
c28/11/2016 21:43 7,640
COPYING12/02/2019 15:40 <DIR>
d28/11/2016 21:43
3,553 dnarna_basepairs.txt28/11/2016 21:43
3,553
dnarna_basepairs_2.txt28/11/2016 21:43
5,248 dnarna_params.txt12/02/2019
15:40 <DIR>
e27/04/2018 10:59 105,193
ener_lib.cif28/11/2016 23:06
105,136 ener_one_lib.cif12/02/2019 15:40
<DIR> f12/02/2019 15:40
<DIR> g12/02/2019
15:41 <DIR>
h12/02/2019 15:41 <DIR>
i12/02/2019 15:41 <DIR>
j12/02/2019 15:41 <DIR>
k12/02/2019 15:41 <DIR>
l12/02/2019 15:41
<DIR> list12/02/2019
15:41 <DIR>
m28/11/2016 21:43 1,372,146
mon_lib_ind.cif28/11/2016 21:43
6,490,087 mon_lib_ind2.cif28/11/2016 23:06
120
mon_lib_one_ind.cif28/11/2016 23:06
396 mon_lib_one_ind2.cif12/02/2019
15:41 <DIR>
n31/08/2018 15:52 35,312
new_entries.txt31/08/2018 15:52
23,685 not_replaced_entries.txt12/02/2019
15:41 <DIR>
o12/02/2019 15:41 <DIR>
p28/11/2016 21:43 2,490,954
pdb_alt_names.txt28/11/2016 21:43
7,794 pdb_v2to3.py12/02/2019 15:41
<DIR> q12/02/2019 15:41
<DIR> r31/08/2018
15:52 29,731
replaced_entries.txt31/08/2018 15:52
754 revert_list.txt12/02/2019
15:41 <DIR>
s12/02/2019 15:42 <DIR>
t28/11/2016 21:43 557
template_link.pdb12/02/2019 15:42
<DIR> u12/02/2019 15:42
<DIR> v12/02/2019
15:42 <DIR>
w31/08/2018 15:52 24
windows_reserved_words.txt12/02/2019 15:42
<DIR> x12/02/2019 15:42
<DIR> y12/02/2019
15:42 <DIR> z--
Professor Kevin
CowtanYork Structural Biology
Laboratory / Department of Chemistry
University of York, Heslington, York, YO10 5DD,
UK
https://www.york.ac.uk/chemistry/staff/academic/a-c/kcowtan/
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