I am attempting to run eddy_quad and all of my data sets give me the following error. Can anyone help me figure out where the problem is originating?
eddy_quad eddy_unwarped -idx index.txt -par acqparams.txt -m nodif_brain_mask.nii.gz -b bvals
found b-shell of 16 orientations with b-value 20.000000
found b-shell of 108 orientations with b-value 1000.000000
found b-shell of 106 orientations with b-value 2000.000000
Traceback (most recent call last):
File "/usr/local/fsl6/bin/eddy_quad", line 52, in <module>
main(args.eddyBase, args.eddyIdx, args.eddyParams, args.mask, args.bvals, args.bvecs, args.output_dir, args.field, args.slspec, args.verbose)
File "/usr/local/fsl6/fslpython/envs/fslpython/lib/python3.6/site-packages/eddy_qc/QUAD/quad.py", line 359, in main
quad_avg_maps.main(pp, data, eddyOutput)
File "/usr/local/fsl6/fslpython/envs/fslpython/lib/python3.6/site-packages/eddy_qc/QUAD/quad_avg_maps.py", line 40, in main
i_max = np.round(np.mean(vol[:,:,:][data['mask'] != 0.0])+3*np.std(vol[:,:,:][data['mask'] != 0.0]))
IndexError: too many indices for array
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