Hello,
I am trying to run many subjects through Feat level 1 on the commandline and I want to include estimated high-pass filters based on the design (which is slightly different for each subject).
I'm using a template .fsf file for each subject (with the high pass filter cutoff set to 9999 as suggested in another thread), changing the relevant info (e.g., file paths), and using feat_model to generate a design.mat file to be used as the input for cutoffcalc.
The problem I am running into is that feat_model generates a design.mat file that does not include the additional confound EVs (i.e., extra motion parameters) specified in my .fsf template and thus gives a very different value than if I estimate this value on the Feat GUI (e.g., cutoff= 480 versus 90). Is there any way to include those confound EVs in the design.mat without having to load each subject into the GUI manually?
Thanks,
Paola
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