Hi,
Did you manually modify the result from AutoPick?
This used to be a problem in RELION 2.1, but should not cause
problems in 3.0.
Best regards,
Takanori Nakane
> Dear All,
>
> Has anybody experienced an "ERROR in appending metadata tables with not
> the same columns!" during particle extraction?
>
> First I thought it might have been because of some of the mics failed in
> MotionCor2:
> data/92-36_000.tif: too few valid local trajectories to fit local motion
> model.
>
> But then I split the mics into batches and in one I got the ERROR and in
> one I did not, even when the MotionCor2 fail was present in both.
>
> Any advice will be appreciated.
>
> Best wishes
>
> Tomas
>
>
>
>
> The full log:
>
> === Backtrace ===
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi(_ZN11RelionErrorC1ERKSsS1_l+0x41)
> [0x429651]
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi(_ZN13MetaDataTable6appendERKS_+0x181)
> [0x432761]
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi(_ZN13Preprocessing16joinAllStarFilesEv+0x421)
> [0x44b611]
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi(_ZN16PreprocessingMpi19runExtractParticlesEv+0x3f3)
> [0x46a243]
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi(_ZN16PreprocessingMpi3runEv+0x27)
> [0x46a637]
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi(main+0x3b)
> [0x4209ab]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x2ab3de51cb45]
> /programs/x86_64-linux/relion/3.0_beta_cu8.0/bin/relion_preprocess_mpi()
> [0x4210c1]
> ==================
> ERROR:
> ERROR in appending metadata tables with not the same columns!
> [warn] Epoll ADD(4) on fd 104 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 85 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 83 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 147 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 128 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 71 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 105 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 87 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 138 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 130 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 136 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 119 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 91 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 80 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 139 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 74 failed. Old events were 0; read change was
> 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 137 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 145 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
> [warn] Epoll ADD(4) on fd 111 failed. Old events were 0; read change
> was 0 (none); write change was 1 (add): Bad file descriptor
>
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