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TB-SUPPORT  December 2018

TB-SUPPORT December 2018

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Subject:

Re: Building Singularity Containers

From:

Alessandra Forti <[log in to unmask]>

Reply-To:

Testbed Support for GridPP member institutes <[log in to unmask]>

Date:

Thu, 6 Dec 2018 14:05:49 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (155 lines)

On 06/12/2018 14:03, Alessandra Forti wrote:
> Hi Gareth,
>
> On 06/12/2018 13:40, Gareth Roy wrote:
>> Hi,
>>
>> So having now fallen down the rabbit hole of singularity again (it's 
>> been a while since I dived into the docs), has anyone got experience 
>> with Singularity 3.0?
>>
>> It appears to be a complete re-write in go and has a number of 
>> differences to the 2.X version we've been using on the grid (I'm 
>> assuming as it's the commercial offering). Site is here:
>>
>> https://www.sylabs.io/docs/
>>
>> rather than:
>>
>> https://singularity.lbl.gov/
>>
>> The page which is very shiny, has some slightly disturbing text for 
>> the way we use containers on the Grid at the moment, for instance 
>> rpm's appear to be only for the pro version as does 
>> streamlined/preferred security updates....and the image format has 
>> changed again with the selling point that it's a single monolithic 
>> entity rather than cached layers or a simple directory -
>>
>>   "Singularity can take any OCI compatible format and encapsulate it 
>> into a “Singularity Image Format” (SIF) package. This package now 
>> becomes the runtime format for the container. No more tarballs. No 
>> more root owned layers or daemons, this is the runtime executable 
>> format!"
> nothing has changed from this point of view. Even before the rpms 
> circulating weren't produced by the singularity team. WLCG has 
> produced rpms for the past year. The image if you build it like I 
> built it in my other reply is monolythic, it has always been 
> singularity selling point to run as an unprivileged monolitic 
> executable. That is why we adopted it on the grid.
or unpacked in CVMFS as it happens.
>
> If anything the fact that they are more OCI compatible it is a good 
> thing. It means there will be less problems for the users when they 
> build for example on docker and use the image with singularity.
>>  From the docs it looks like you can still us a "sandbox" mode in 
>> which the container  is in a directory, but this seems to be assumed 
>> to be for development etc.
> I don't think anything has changed much for sandboxing. Though I don't 
> think anyone has tried yet. I'm waiting for some more ironing out of 
> problems after the complete rewrite.
>
> cheers
> alessandra
>>
>> Does anyone have any experience with this version, or how compatible 
>> it is with how we do things?
>>
>> Thanks,
>>
>> Gareth
>>
>>
>>
>> On 06/12/2018, 12:12, "Testbed Support for GridPP member institutes 
>> on behalf of Waugh, Ben" <[log in to unmask] on behalf of 
>> [log in to unmask]> wrote:
>>
>>      Hi Chris,
>>           I went to a talk recently by someone who had been trying 
>> out Singularity
>>      and was similarly confused to start with. I think root (or sudo) 
>> access
>>      is needed in order to create a container, but that it can then 
>> be run
>>      without root access. So a user who is not trusted by you, but 
>> has root
>>      access on e.g. their own laptop, can create an image and run it 
>> on your
>>      system.
>>           Cheers,
>>      Ben
>>           On 06/12/2018 12:04, Chris Brew - UKRI STFC wrote:
>>      > Hi All,
>>      >
>>      > As is often the case, I am confused. Specifically today, I am 
>> confused about about Singularity Containers.
>>      >
>>      > A bit of background; I’ve been getting several requests in 
>> from different people saying “I want version X.Y.Z of 
>> root|Python|gcc|whatever, and your version of CentOS/SL only has 
>> A.B.C”. Now there are various ways of satisfying people 
>> (/cvmfs/software.cern.ch is a very good resource) but this sounded 
>> like an ideal use case for containers.
>>      >
>>      > I’ve gone off and looked at the Singularity documentation and 
>> although it makes a big thing of “Untrusted images from untrusted 
>> users” all the example commands for building images start with ‘sudo 
>> singularity…’
>>      >
>>      > So, can users build their own images without sudo or is their 
>> definition of an “untrusted” user different to mine?
>>      >
>>      > The second related thing I’m confused about is the different 
>> image formats, I cannot seem to find a comparison between them with 
>> pros and cons. And on that is there a specific issue with images that 
>> need loopback devices?
>>      >
>>      > Yours,
>>      > Chris.
>>      >
>>      > --
>>      > Dr Chris Brew
>>      > Scientific Computing Manager
>>      > Particle Physics Department
>>      > UKRI - STFC - Rutherford Appleton Laboratory
>>      > Harwell Oxford,
>>      > Didcot
>>      > OX11 0QX
>>      > +44 1235 446326
>>      >
>>      >
>>      > 
>> ########################################################################
>>      >
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>>      > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=TB-SUPPORT&A=1
>>      >
>>           --
>>      Dr Ben Waugh                                   Tel. +44 (0)20 
>> 7679 7223
>>      Computing and IT Manager                       Internal: 37223
>>      Dept of Physics and Astronomy
>>      University College London
>>      London WC1E 6BT
>> ########################################################################
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>>
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>

-- 
Respect is a rational process. \\//
For Ur-Fascism, disagreement is treason. (U. Eco)

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