Thank you for your answer!
I had some problems doing the things you suggested:
1) couldn't copy some of the directories in my FSLDIR. for example the bin directories that contains cluster
2) couldn't replace the FSL source files in the 3 dirs under src/ with files from the repo because I didn't find any src folder
3) I downloaded the content of the github repository, and I wnent into the cluster folder, but when I did make, it gave me an error telling no make file found.
Maybe I am doing something wrong, I also noticed that in the fsl shell setup they say to do FSLDIR=/usr/local/fsl, but my FSLDIR is different. /usr/share/fsl/5.0
Could it have something to do with me not being able to run this new cluster version?
Sorry to bother you with this,
Thank you,
Carlotta.
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