Pretty straightforward question: I ran an identical MCFLIRT command on my local machine which runs FSL 5.0.10 and using a FSL that is part of a container and is version 5.0.9 and get different transformation parameters. Interestingly the first 13 lines (and the last line) are identical while the remaining are different. Just wanted to know if this is an algorithmic difference between MCFLIRT in the different FSL versions.
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