Hi Tim,
Unfortunately, I don't have the book right now. I'm going through the online examples and it says everywhere to use FSL 6.0 for the ASL perfusion analysis, or the standalone BASIL if you have FSL 5.0 series. Currently, I only need oxford_asl file that includes motion correction option (--moco).
Another problem is that the Prototype GUI from the standalone version is also not working and gives the below mentioned error (downloaded from here: https://github.com/ibme-qubic/oxford_asl/releases).
amnah@amnah-VirtualBox:/$ home/amnah/Downloads/oxford_asl/asl_gui
Traceback (most recent call last):
File "home/amnah/Downloads/oxford_asl/asl_gui", line 14, in <module>
main()
File "/home/amnah/Downloads/oxford_asl/python/asl/gui/__init__.py", line 91, in main
top = AslGui()
File "/home/amnah/Downloads/oxford_asl/python/asl/gui/__init__.py", line 54, in __init__
self.preview = PreviewPanel(hpanel)
File "/home/amnah/Downloads/oxford_asl/python/asl/gui/widgets.py", line 294, in __init__
self.axes = self.figure.add_subplot(111, facecolor='black')
File "/usr/lib/python2.7/dist-packages/matplotlib/figure.py", line 1005, in add_subplot
a = subplot_class_factory(projection_class)(self, *args, **kwargs)
File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_subplots.py", line 73, in __init__
self._axes_class.__init__(self, fig, self.figbox, **kwargs)
File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.py", line 537, in __init__
self.update(kwargs)
File "/usr/lib/python2.7/dist-packages/matplotlib/artist.py", line 856, in update
raise AttributeError('Unknown property %s' % k)
AttributeError: Unknown property facecolor
It would be great if someone can help me resolve these errors.
Thanks,
Amnah
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