The README file does not give much info, that's true.
But the GitHub repo contains source code in 3 directories which match FSL directories under $FSL_DIR/src/: 'misc_c', 'feat5', and 'cluster'. So here is a guess:
The installation instructions (the make command) tells you you'll have to compile a new version of the FSL 'cluster' command from these sources.
So what you should do is:
- Create a copy of your FSL dir, and name it something that indicates that this is NOT the official FSL distribution because you changed stuff in it (the author chose 'fsl_MODIFIED').
- Checkout/download the repo and replace the FSL source files in the 3 dirs under src/ with files from the repo
- Make sure you have a compiler and tool chain installed. How to do this depends on your operating system and the code. Under a Debian-based Linux distro, something like
'sudo apt-get install build-essential make gcc'
should get you started.
- Run the commands given in that README:
FSLDIRUP=/usr/local/fsl_MODIFIED
cd ${FSLDIRUP}/src/cluster
make
If the command finishes without errors, it will have created a new version of the 'cluster' command.
Note that you need to make sure that you are using the correct NEW cluster command. Most likely the old one is one your PATH, so you should call the new one by using the full path to it.
Hope this helps.
Tim
> On December 18, 2018 at 11:40 AM Carlotta Fabris <[log in to unmask]> wrote:
>
>
> Yes of course!
>
> Sorry I forgot to insert the link in the previous message, here it is the github link: https://github.com/cmaumet/fsl
>
> The link to the paper is this one: https://riojournal.com/article/12368/
>
> Thank you a lot,
> Carlotta.
>
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--
Dr. Tim Schäfer
Postdoc Computational Neuroimaging
Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy
University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
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