Thanks a lot for this tip! I had considered that but since the other people analyzing my sample had no problem with orientation I thought it might be something else. However, now I will of course try that nonetheless!
Thanks!
-----Ursprüngliche Nachricht-----
Von: FSL - FMRIB's Software Library [mailto:[log in to unmask]] Im Auftrag von Daniel Callow
Gesendet: Montag, 10. Dezember 2018 08:08
An: [log in to unmask]
Betreff: Re: [FSL] tbss_2_reg poor registration
For anyone that runs into a similar problem, running fslreorient2std on the data before tbss_2_reg really improved the registration process.
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