Hello! every fsl experts and users
I want to register the standard template into my T1 image. when I ran my command, it failed without giving wrong information. And it just returned the usage information of fnirt.
My command is " fnirt --in=./T1.nii.gz --aff=./template2T1_flirt.mat --cout=./warp --iout=./T1/template2T1 --jout=./jac --ref=./template.nii.gz "
Here both T1 and template is non-skull striped, and "template2T1_flirt.mat" is the transformation gotten from "flirt". By the way, the T1 and template images I used when doing filrt is skull striped.
The resolution of T1 is 512*512*512 (0.5*0.5*1mm), the resolution of template is 157*189*136 (1*1*1mm).
If any other information is needed, please let me know.
Thanks very much!
zhaoqing
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