Hi Jesper,
Thank you for your reply! Yes, it is an FA image. I was only able to provide that one picture due to the max allowable size of a post on the forum.
And yes, the holes appear in all of the eddy corrected images in the same place as the FA images. If I do not incorporate the field map the holes do not occur. Indicating it is likely an issue with the field map right?? I want to find a way to incorporate the field map to improve the eddy correction process. I saw a previous post and tried applying a 2mm smoothing, but it didn't seem to improve the image much.
Thank you,
Daniel
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