Hi,
This bug was fixed today.
For details, please see
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1811&L=CCPEM&F=&S=&P=25631.
Best regards,
Takanori Nakane
On 2018/11/08 23:07, Hansen, Bryan (NIH/NIAID) [E] wrote:
> Hi All,
>
> I'm trying to run 2D classification using Relion 3.0 and I'm getting an error message that I've never seen before:
>
> in: /home/hansenbry/EMsoftware/relion-3.0_beta/src/backprojector.h, line 211
> === Backtrace ===
> /usr/local/bin/relion_refine_mpi(_ZN11RelionErrorC1ERKSsS1_l+0x41) [0x446611]
> /usr/local/bin/relion_refine_mpi(_ZN13BackProjector21set2DFourierTransformERK13MultidimArrayI8tComplexIdEERK8Matrix2DIdEbPKS0_IdEdb+0xd6) [0x5c3d96]
> /usr/local/bin/relion_refine_mpi(_ZN11MlOptimiser41calculateSumOfPowerSpectraAndAverageImageER13MultidimArrayIdEb+0x163e) [0x5add0e]
> /usr/local/bin/relion_refine_mpi(_ZN14MlOptimiserMpi41calculateSumOfPowerSpectraAndAverageImageER13MultidimArrayIdE+0x23) [0x45f113]
> /usr/local/bin/relion_refine_mpi(_ZN14MlOptimiserMpi10initialiseEv+0x9f4) [0x466f34]
> /usr/local/bin/relion_refine_mpi(main+0xb0b) [0x43324b]
> /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f0a8d836445]
> /usr/local/bin/relion_refine_mpi() [0x43658f]
> ==================
> ERROR:
> Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3
>
> The full command I'm using is:
>
> `which relion_refine_mpi` --o Class2D/job013/run --i Extract/job011/particles.star --dont_combine_weights_via_disc --pool 3 --pad 2 --ctf --iter 25 --fast_subsets --tau2_fudge 2 --particle_diameter 50 --K 25 --flatten_solvent --zero_mask --oversampling 1 --psi_step 12 --offset_range 5 --offset_step 2 --norm --scale --j 4 --gpu "0"
>
> I couldn't find any documentation on this error. I'm sure somebody will see this and know what I did wrong right away. Thanks for any tips.
>
>
> Bryan Hansen
> Computational Biologist / Electron Microscopist
> NIH/NIAID/RTB/RML/EMU
> Rocky Mountain Laboratories
> 903 S. 4th St
> Hamilton, MT 59840
> 406.363.9202
>
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