Hi there,
I've been trying to transform my ROI's from standard space to DTI, and it's been working well for 600 subjects. Except there are two subjects that have bad registration and I'm not sure why or how to fix this. How can I troubleshoot at what point the registration isn't correct?
I followed the steps listed in this reference website: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FNIRT/UserGuide
flirt
fnirt
invwarp
convertwarp
applywarp
Any suggestions?
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