Hi,
If the result (trajectories and B factors) looks sensible, you can
safely ignore this message.
See
https://bitbucket.org/scheres/relion-3.0_beta/issues/16/bogus-warning-messages-about-pixel-size
for details.
Best regards,
Takanori Nakane
On 2018/10/15 18:45, SUBSCRIBE CCPEM Anonymous wrote:
> Hi,
>
> I have a related question.
> When I ran polishing I got an error message
>
> "WARNING: pixel size (--angpix) is greater than the AutoPick pixel size (--coords_angpix)
> This is probably a rounding error. It is recommended to set --angpix (1.03) to at least 1.03"
>
> and the first couple lines of my log files are
>
> + Reading Refine3D/job069/run_data.star...
> - Using pixel size calculated from magnification and detector pixel size in the input STAR file: 1.03
> + Using movie pixel size from MotionCorr/job004/micrographs/2017dataset_0001.star: 0.515 A
> + Using coord. pixel size from MotionCorr/job004/micrographs/2017dataset_0001.star: 1.03 A
>
> (When I did motioncor I used 0.515A pixel size)
>
> Does anyone know how could I get rid of this error?
>
> I tried to apply an extra argument --angpix 1.03 but the message still showed up.
>
> Thank you.
> Chia
>
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