Hi All,
I am trying to do Bayesian polishing in Relion 3.0 bera 2 and getting following error (Name of my micrograph is replaced by xx)
=== RELION MPI setup ===
+ Number of MPI processes = 2
+ Master (0) runs on host = cryoem
+ Slave 1 runs on host = cryoem
=================
+ Reading CtfRefine/job091/particles_ctf_refine.star...
+ Using movie pixel size from MotionCorr/job084/Micrographs/xx.star: 0.532 A
+ Using coord. pixel size from MotionCorr/job084/Micrographs/xx.star: 1.064 A
+ Using dose per frame from MotionCorr/job084/Micrographs/xx.star: 1.29 e/A^2
- Motion has already been estimated for all micrographs
- Will only recombine frames for 1301 unfinished micrographs
+ Reading references ...
+ Masking references ...
+ Transforming references ...
+ Fitting B/k-factors between 15 and 103 pixels, or 20 and 3.09903 Angstrom ...
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 16986 RUNNING AT cryoem
= EXIT CODE: 139
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
I have tried multiple combination of MPI and thread without any success.
If I use MPI 1 and thread 1 then it gets stuck at " + Fitting B/k-factors between 15 and 103 pixels, or 20 and 3.09903 Angstrom ..."
If any one know how to solve this please share.
Thanks in advance
Best,
Sandip Basak
Postdoctoral fellow
Case Western Reserve University
Cleveland, OH 44120
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