Hi,
Are you using MotionCor2 1.2.0? It has a bug in the -LogFile option,
which prevents RELION 3 from reading the local trajectories.
Please update to 1.2.1.
RELION 3 use local trajectories from MotionCor2 only for making logfile.pdf.
Bayesian Polishing uses only global trajectories, not local trajectories
from MotinoCor2 for initialisation. So you can safely proceed to the next
step.
In other words, you don't have to re-run motion correction with 1.2.1.
Best regards,
Takanori Nakane
> Hi All,
>
>
> I'm trying to run
> MotionCor2 in Relion 3.0 and I receive the following warning
> message:
>
> warning: failed to load local shifts from MotionCor2
> logfile, but this does not affect further processing:
> MotionCorr/job006/Micrographs/FoilHole_19520373_Data_1952563
> 3_19525634_20181019_1635_Fractions0-Patch-Patch.log
>
>
>
> This warning appeared for all micrographs. I'm assuming the local shifts
> is
> being ignored and the intermediate log file was not created!
>
>
> Any idea what could be the reason to get this warning? Is it OK to
> ignore
> this and proceed forward?
>
>
> Thank in advance for your help!
>
>
> Ibrahim
>
>
>
>
>
>
>
>
>
>
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