Thanks Thomas, I do have a very large data set (9000+ movies) and that might be the reason. I will try split the data in half and rerun it.
Best
Xinchao
Sent from my iPhone
> On Oct 25, 2018, at 12:22 PM, Thomas Bausewein <[log in to unmask]> wrote:
>
> Hi Xinchao,
>
> im my case I had a really large dataset and the set2Dslice error vanished when I split the dataset in half (using the Relion GUI) and classified the smaller datasets individually.
> I did not remove any particles, neither from the folders nor from the particle.star files.
>
> You should also do relion_image_handler --stats --i Extract/Job006/particles.star in your project folder and not in the Extract/job006 folder, since it reads the path that is written in the particles.star file.
>
> Thomas
>
>
>> On 25 Oct 2018, at 20:59, Xinchao Yu <[log in to unmask]> wrote:
>>
>> Hi All, I got the the same error message when I tried to do 2D classfication: Backprojector::set2DSlice%%: Dimension of the data array should be 2 or 3
>> I was able do MotionCor2, Gctf, Autopicking and particle extraction without any error messages.
>> I checked the files with relion_image_handler --stats --i particles.star and it's always the first file that give the following message:
>> ERROR:
>> Cannot read file Extract/Job006/Micrographs/NP146-g1_06973.mrcs It does not exist.
>> I checked the folder and the file does exist and when I deleted the file from the .star files I would get same error message for the next file.
>> Does anyone have a solution to this?
>> Thanks,
>> Xinchao Yu
>>
>> ########################################################################
>>
>> To unsubscribe from the CCPEM list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
>
########################################################################
To unsubscribe from the CCPEM list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
|