Hi Xinchao,
im my case I had a really large dataset and the set2Dslice error vanished when I split the dataset in half (using the Relion GUI) and classified the smaller datasets individually.
I did not remove any particles, neither from the folders nor from the particle.star files.
You should also do relion_image_handler --stats --i Extract/Job006/particles.star in your project folder and not in the Extract/job006 folder, since it reads the path that is written in the particles.star file.
Thomas
> On 25 Oct 2018, at 20:59, Xinchao Yu <[log in to unmask]> wrote:
>
> Hi All, I got the the same error message when I tried to do 2D classfication: Backprojector::set2DSlice%%: Dimension of the data array should be 2 or 3
> I was able do MotionCor2, Gctf, Autopicking and particle extraction without any error messages.
> I checked the files with relion_image_handler --stats --i particles.star and it's always the first file that give the following message:
> ERROR:
> Cannot read file Extract/Job006/Micrographs/NP146-g1_06973.mrcs It does not exist.
> I checked the folder and the file does exist and when I deleted the file from the .star files I would get same error message for the next file.
> Does anyone have a solution to this?
> Thanks,
> Xinchao Yu
>
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