Dear David,
I am sorry, but this functionality is still experimental and will probably not always work.
Best,
Christian
On Wed, 12 Sep 2018 08:19:29 +0200, Szabolcs David <[log in to unmask]> wrote:
>Dear All,
>
>Apologies for the repost, but using the lesion mask is still an issue.
>Tried the latest version, couldn't help.
>
>Best,
>Szabolcs
>
>On Thu, Aug 30, 2018 at 1:14 PM Szabolcs David <[log in to unmask]> wrote:
>
>> Dear Christian and co.,
>>
>> I was processing a T1 scan with the manual lesion correction, but had some
>> troubles:
>>
>> the pipeline:
>> - masked out the desired region ('lesion') via hand by set the values to 0
>> - set the SLC to 1
>> - run a standard processing/segmentation
>>
>> After the denoising (mData.nii) there were some non-zero values inside the
>> lesion mask and also the lesion mask output (p8Data.nii) from cat12 was the
>> rim/edge of the original mask, only where the lesion values remained 0 in
>> the denoised image. The normalized mask (wp8Data.nii) was also strange.
>>
>> Could you please look into this matter?
>>
>> Best,
>> Szabolcs
>>
>
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