Hello FSL experts,
I recently set the FIX for the resting state fMRI data.
My system is OSX (10.13.6) with matlab 2016b.
When I did FIX in my system, the following error was found.
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dhkim$ /Users/dhkim/fsl/fix1.066/fix rfMRI.ica /Users/dhkim/fsl/fix1.066/training_files/Standard.RData 20
FIX Feature extraction for Melodic output directory: rfMRI.ica
create edge masks
run FAST
registration of standard space masks
extract features
FIX Classifying components in Melodic directory: rfMRI.ica using training file: /Users/dhkim/fsl/fix1.066/training_files/Standard.RData and threshold 20
No valid labelling file specified
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I found the answer in the FIX/FAQ, when I get “No valid labelling file specified”.
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When I run FIX, I obtain the following output: “No valid labelling file specified”. What does it mean?
FIX doesn’t find the classification file with the list of components to be removed, so the error could be either in the features extraction or in the classification. To see which is the problem have a look at the following log files:
<subject.ica>/fix/logMatlab.txt (this should show errors in Matlab part, i.e. features extraction)
<subject.ica>/.fix.log
<subject.ica>/.fix_2b_predict.log (those are log file in general for the whole routine) You’ll probably find errors related to Matlab or R, so you might need to check your settings.sh file following the setup instructions described in the FIX README file
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After that, I found the logMatlab.txt in the fix folder but there is no error message in the file.
This is the lagMatlab.txt file.
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< M A T L A B (R) >
Copyright 1984-2016 The MathWorks, Inc.
R2016b (9.1.0.441655) 64-bit (maci64)
September 7, 2016
For online documentation, see http://www.mathworks.com/support
For product information, visit www.mathworks.com.
rfMRI.ica/
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End of Matlab Script
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There is no file of .fix.log or .fix_2b_predict.log.
What should I do for doing fix in my data?
I appreciate your concern.
Best regards,
Kim
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