Does Relion 3.1Beta support Gctf version 1.18-B1 (the special phase plate version)?
If I use V1.06, I get the expected outputs, but if I try to use V1.18-B1 with additional options
--cosearch_refine_ps 1 --refine_2d_T 1 --overlap 0.8 --do_EPA --smooth_resL 20 --phase_shift_S 3
I wind up with warnings like "WARNING: skipping, since cannot get CTF values for..."
Not surprisingly. this results in an empty micrographs_ctf.star file, and no eps files or logfile.
The defocus and other values are all in the gctf*.out files, and seem to be formatted identically to those in version 1.06.
Is the Gctf 1.18-B1 output format just different enough in some other way to throw off parsing?
Thanks!
-jh-
########################################################################
To unsubscribe from the CCPEM list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
|