Hi,
I want to mention that I have the same message about the pixel size, that it is a rounding error. But because the training was running I didn’t expect that it would matter.
Best regards
Laura
> On 20 Sep 2018, at 09:05, Takanori Nakane <[log in to unmask]> wrote:
>
> Hi,
>
> > the warning of rounding error in performing bayesian polishing?
>
> This is probably harmless. See comments from Jasenko (the developer
> of Bayesian Polishing) on
> https://bitbucket.org/scheres/relion-3.0_beta/issues/16/bogus-warning-messages-about-pixel-size
>
> > No progress after preparing alignment data
>
> Perhaps it is just taking time? Unfortunately, tuning can be very slow.
> What is the CPU usage during this?
>
> It is also useful to see if it finishes quickly if you specify only
> 100 particles for tuning (of course, the result is not useful;
> just for testing).
>
> Best regards,
>
> Takanori Nakane
>
> P.S.
>
> Please paste error messages as texts and avoid attaching as
> screen shots. Images are large and cannot be searched.
>
> On 2018/09/20 7:47, 류범한 wrote:
>> Hello, ccpem
>> Has anybody seen the warning of rounding error in performing bayesian polishing?
>> It just stopped without any error message like below. (No progress after preparing alignment data)
>> And the following is the run.err.
>> I put “—angpix 0.885” into the additional arguments blank in Running Tab, but it did not work.
>> And everything related to the calculation of angpix (in star file) looked just fine.
>> N. of MPI procs was set to 1, and N of thread to 16, as mentioned in tutorial. So, it is probably not a MPI issue or something.
>> How can I progress it further?
>> Hope somebody suggest a solution to this problem.
>> Best regards,
>> Han
>> Bum Han Ryu
>> Postdoctoral Researcher
>> Korea Basic Science Institute (KBSI)
>> 161 Yeongudanji-ro, Ochang-eup, Cheongwon-gu, Cheongju-si
>> Chungcheongbuk-do, Republic of Korea
>> Office) +82-43-240-5329
>> Mobile) +82-10-7119-0505
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