Dear Christian,
Thanks for the release of cat12.5.
However, I received an error message regarding AMAP segmentation that never occurred (on the same subject) with previous releases.
Do you have any idea what can go wrong?
I have attached the log for your information.
Thanks.
Yann
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R2013a (8.1.0.604) 64-bit (maci64)
February 15, 2013
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CAT parallel processing with MATLAB PID: 1669
------------------------------------------------------------------------
CAT12.5-rc1 r1355: 1/30: ./mridata/cat12/Subjects/001/SUBJ001.nii
------------------------------------------------------------------------
SANLM denoising (medium): 52s
Internal resampling (0.83x0.83x0.90mm > 1.00x1.00x0.90mm): 2s
APP: Rough bias correction:
Initialize 16s
Estimate background 20s
Initial correction 26s
Refine background 18s
Final correction 18s
Background correction 1s
Final scaling 4s
104s
Coarse affine registration 13s
Affine registration 12s
SPM preprocessing 1 (estimate 1): 37s
SPM preprocessing 1 (estimate 2): 384s
SPM preprocessing 1 (estimate skull-stripped): 250s
SPM preprocessing 1 (estimate skull-stripped): 234s
SPM preprocessing 2 (write):
Write Segmentation 53s
Update Segmentation 143s
Update Skull-Stripping 24s
Update probability maps 19s
239s
Global intensity correction: 47s
SANLM denoising after intensity normalization (medium): 16s
Fast Shooting registration 120s
Local adaptive segmentation (LASstr=0.50):
Prepare maps 11s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 39s
Estimate local tissue thresholds (WM) 28s
Estimate local tissue thresholds (GM) 13s
Estimate local tissue thresholds (CSF/BG) 11s
Intensity transformation 112s
SANLM denoising after LAS (medium) 13s
13s
ROI segmentation (partitioning):
Atlas -> subject space 16s
Major structures 10s
Ventricle detection 39s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.28) 34s
Manual stroke lesion detection 0s
Closing of deep structures 4s
Side alignment 9s
Final corrections 12s
135s
Blood vessel correction (BVCstr=0.50): 6s
Amap using initial SPM12 segmentations (MRF filter strength 0.07): 21s
AMAP peaks: [CSF,GM,WM] = [0.28±0.07,0.12±0.03,NaN±NaN]
------------------------------------------------------------------------
CAT Preprocessing error for SUBJ001:
------------------------------------------------------------------------
AMAP estimated untypical tissue peaks that point to an
error in the preprocessing bevor the AMAP segmentation.
------------------------------------------------------------------------
1029 - cat_main
721 - cat_run_job1070
16 - cat_run_newcatch
398 - run_job
161 - cat_run
------------------------------------------------------------------------
Warning:cat_io_report:CATgui: Incomplete report creation in cat_io_report because of incomplete CAT parameters.
Error:cat_io_report:dispYoHist: Error in displaying the color histogram of the original image.
Error:cat_io_report:dispYmHist: Error in displaying the color histogram of the processed image.
Print 'Graphics' figure to:
/Volumes/Macintosh HD 2/mridata/IGP/cat12/Subjects/001/report/catreport_IGP001.pdf
{Error using cat_main (line 1029)
AMAP estimated untypical tissue peaks that point to an
error in the preprocessing bevor the AMAP segmentation.
Error in cat_run_job1070 (line 721)
cat_main(res,obj.tpm,job);
Error in cat_run_newcatch (line 16)
cat_run_job1070(job,tpm,subj);
Error in cat_run>run_job (line 398)
cat_run_newcatch(job,tpm,subj);
Error in cat_run (line 161)
varargout{1} = run_job(job);
}
[Warning: Objects of uitools.uimodemanager class exist - not clearing this class
or any of its superclasses]
[Warning: Objects of uitools.uimode class exist - not clearing this class or any
of its superclasses]
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