Dear Jesper,
thanks for your reply.
I will give the fake 3D stack a go.
No, it isn't for diffusion data, but actually it could be exactly what you said (intensity mixing between adjacent slices), as in the model I am using to fit the data there is also a slice-dependent factor. If -estmov assumes a 3D model for motion correction, it may be then the reason of the weird pattern I see in my results.
Thanks a lot for your help
Marco
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