Hi,
Sorry for the re-post, but I haven't found a solution to my problem yet and was hoping someone could help me.
I ran ICA-AROMA and everything went well, without errors:
ICA_AROMA.py -in func_data.nii -mc movement_pars.par -out denoised_func.nii.gz -den both
However when loading the denoised_func_data_aggr.nii.gz, denoised_func_data_nonaggr.nii.gz and the original realined func_data.nii data, these images have the exact same values at every voxel. I suspect this means something went wrong with the procedure, but there were no error messages, so I have no clue what the problem could be. ICA-AROMA saved a mask.nii.gz but it is empty (ie all zeros), so perhaps that could be the problem?
Thanks
Ben
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