Dear Jesper,
Thank you for your answer. Nevertheless, if I don't do the prior coregistration, when trying to merge the different scans for topup (forward phase encoding and reverse phase encoding), I get the following error:
WARNING:: Inconsistent orientations for individual images when attempting to merge.
Merge will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!
What are your thoughts about this?
Thank you in advance!
Ariadna
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