Hi everyone,
This is a sort of follow-up from my last post asking about a slide from the FSL Course. Here are some questions I have from a slide about Troubleshooting Registration:
https://imgur.com/a/15GuocV
1) On the part that says "if images are nearly aligned: try limiting the search". What does this mean?
2) My next question is on the line that stats "For FNIRT: check initial affine alignment is OK"... How do we know it is okay? What is the gauge on this?
3) My next question comes from the part that says "For small FOV: acquire whole-brain EPI for multi-stage reg"... What does this mean?
Thanks so much
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