Dear Ariadna,
this warning tells you that something in the headers of your images is different. You can use fslinfo and check the dim* and pixdim* fields to ensure that they are the same. Typically that warning just means that there is some tiny difference in pixdim caused by rounding errors at some earlier stage.
Jesper
> On 29 Jun 2018, at 13:25, Ariadna Albajara Saenz <[log in to unmask]> wrote:
>
> Dear Jesper,
>
> Thank you for your answer. Nevertheless, if I don't do the prior coregistration, when trying to merge the different scans for topup (forward phase encoding and reverse phase encoding), I get the following error:
>
> WARNING:: Inconsistent orientations for individual images when attempting to merge.
> Merge will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!
>
> What are your thoughts about this?
>
> Thank you in advance!
>
> Ariadna
>
> ########################################################################
>
> To unsubscribe from the FSL list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|