Quoting CCP4BB automatic digest system <[log in to unmask]>:
> There are 6 messages totaling 891 lines in this issue.
>
> Topics of the day:
>
> 1. Postdoctoral position in ABC transporter-mediated
> polysaccharide secretion
> 2. refinement papers (3)
> 3. I used up all CCP4 projects ... seemingly ... (2)
>
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> ----------------------------------------------------------------------
>
> Date: Mon, 25 Jun 2018 00:15:04 +0000
> From: "Zimmer, Jochen (jz3x)" <[log in to unmask]>
> Subject: Postdoctoral position in ABC transporter-mediated
> polysaccharide secretion
>
> Dear Colleagues,
>
> I would like to draw your attention to an open postdoctoral position
> in our group. We are interested in how cells synthesize and secrete
> surface polysaccharides to form cell walls and extracellular
> matrices. Specifically, the successful candidate will join our
> efforts to structurally and functionally characterize ABC
> transporter-mediated polysaccharide secretion. The project involves
> crystallographic and cryo electron microscopy techniques combined
> with in vitro reconstitutions of transport processes.
>
> The University of Virginia provides an excellent environment for
> interdisciplinary research in microbiology, infectious diseases, and
> membrane biophysics. UVA maintains state-of-the-art infrastructures
> for structural biology, including NMR and EPR spectroscopy, electron
> microscopy, X-ray crystallography, and super-resolution microscopy.
> Interested candidates are encourage to contact me directly
> ([log in to unmask]).
>
> Sincerely,
> Jochen Zimmer
>
>
> *******************************
>
> Jochen Zimmer, D. Phil.
>
> Associate Professor
>
> University of Virginia
>
> Molecular Physiology & Biol. Physics
>
> 480 Ray C. Hunt Dr.
>
> Snyder Bldg. #380
>
> Charlottesville, VA 22908, USA
>
> Phone: 434 243 6506
>
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> ------------------------------
>
> Date: Mon, 25 Jun 2018 12:21:27 +0000
> From: Careina Edgooms <[log in to unmask]>
> Subject: refinement papers
>
> Hello everyone
> I am giving talk about refinement and model building. I wonder if
> anyone knows of latest relevant papers on this topic that you could
> suggest for me?thank you
> Careina
>
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> ------------------------------
>
> Date: Mon, 25 Jun 2018 16:57:35 +0200
> From: Misba Ahmad <[log in to unmask]>
> Subject: Re: refinement papers
>
> Here are some nice papers:
>
> journals.iucr.org/d/issues/2012/04/00/
>
>
> Best
> Misbha
>
>
> On Mon, 25 Jun 2018 at 14:26, Careina Edgooms <
> [log in to unmask]> wrote:
>
>> Hello everyone
>>
>> I am giving talk about refinement and model building. I wonder if anyone
>> knows of latest relevant papers on this topic that you could suggest for me?
>> thank you
>>
>> Careina
>>
>> ------------------------------
>>
>> To unsubscribe from the CCP4BB list, click the following link:
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> ------------------------------
>
> Date: Mon, 25 Jun 2018 17:25:54 +0000
> From: Antonio Ariza <[log in to unmask]>
> Subject: I used up all CCP4 projects ... seemingly ...
>
> Hi all and sorry ... (I thought it best to apologise pre-emptively
> for this rather long question).
>
>
> Ok ... so, I know I should have changed over to CCP4i2 a LOOOONG
> time ago, but a student in my lab had trouble transferring his
> projects from CCP4i to CCP4i2, so I decided to postpone it ... and I
> kept postponing it ever since. I have now run into a problem with
> the old CCP4i gui, which means I might have to change over to CCP4i2.
>
>
> It seems I have run out of projects!
>
>
> Over the last 4 years I have created 251 projects. After I created
> the last one and worked on it for a while, I went and revisited an
> older project. Now I can't access the last project I created from
> the gui anymore.
>
>
> The last project I created would, alphabetically speaking, also be
> the last project in the list that appears when you press the "Change
> Project" button at the top of the gui. However, the list that
> appears seems to only have enough spaces for 250 project names,
> which means it shows the first 250 projects (alphabetically) and the
> last project isn't on it. When I press the "Directories&PojectDir"
> button I can see I did indeed create the project that I'm looking
> for and when I check the computer, all the files for this project
> are in their corresponding directory.
>
>
> I guess, if I were to create a 252nd project with a title that would
> fall towards the beginning of the alphabetical project list, the gui
> would let me do that, but I would then lose what is currently the
> last project I can see on the list, which means I would have 2
> projects I can't access via the gui.
>
>
> If I start using CCP4i2 and copy all my old projects across, will it
> have the same problem? Has anybody else with a large number of
> projects run into this problem?
>
>
> Should I re-create only the 251st project and set up all new
> projects in CCP4i2 and keep the old projects for use in CCP4i instead?
>
>
> Cheers,
>
>
> Tony
>
>
> ------------------------------------------------------
>
> Dr. Antonio Ariza
> University of Oxford
> Sir William Dunn School of Pathology
> South Parks Road
> Oxford
> OX1 3RE
> e-mail: [log in to unmask]<mailto:[log in to unmask]>
> Tel: 00 +44 1865 285655
>
> Links to my public profiles:
> ResearchGate<https://www.researchgate.net/profile/Antonio_Ariza>
> LinkedIn<https://www.linkedin.com/in/antonioariza1>
> GoogleScholar<https://scholar.google.co.uk/citations?user=9pAIKV0AAAAJ&hl=en>
> Twitter<https://twitter.com/DrAntonioAriza?lang=en>
>
> Check out my latest paper!!!
> Structural insights into the function of ZRANB3 in replication
> stress response<http://www.nature.com/articles/ncomms15847>
>
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>
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>
> ------------------------------
>
> Date: Mon, 25 Jun 2018 18:53:46 +0100
> From: Jon Agirre <[log in to unmask]>
> Subject: Re: I used up all CCP4 projects ... seemingly ...
>
> I would transfer the new project to i2, and keep the ‘legacy’ stuff in i1.
> You can access i1 stuff from i2 with the i1 viewer.
>
> Let us know if you need any help with the transition. Happy to receive
> feedback and suggestions!
>
> Jon
> On Mon, 25 Jun 2018 at 18:27, Antonio Ariza <[log in to unmask]>
> wrote:
>
>> Hi all and sorry ... (I thought it best to apologise pre-emptively for
>> this rather long question).
>>
>>
>> Ok ... so, I know I should have changed over to CCP4i2 a LOOOONG time ago,
>> but a student in my lab had trouble transferring his projects from CCP4i to
>> CCP4i2, so I decided to postpone it ... and I kept postponing it ever
>> since. I have now run into a problem with the old CCP4i gui, which means I
>> might have to change over to CCP4i2.
>>
>>
>> It seems I have run out of projects!
>>
>>
>> Over the last 4 years I have created 251 projects. After I created the
>> last one and worked on it for a while, I went and revisited an older
>> project. Now I can't access the last project I created from the gui anymore.
>>
>>
>> The last project I created would, alphabetically speaking, also be the
>> last project in the list that appears when you press the "Change Project"
>> button at the top of the gui. However, the list that appears seems to only
>> have enough spaces for 250 project names, which means it shows the first
>> 250 projects (alphabetically) and the last project isn't on it. When I
>> press the "Directories&PojectDir" button I can see I did indeed create the
>> project that I'm looking for and when I check the computer, all the files
>> for this project are in their corresponding directory.
>>
>>
>> I guess, if I were to create a 252nd project with a title that would fall
>> towards the beginning of the alphabetical project list, the gui would let
>> me do that, but I would then lose what is currently the last project I can
>> see on the list, which means I would have 2 projects I can't access via the
>> gui.
>>
>>
>> If I start using CCP4i2 and copy all my old projects across, will it have
>> the same problem? Has anybody else with a large number of projects run into
>> this problem?
>>
>>
>> Should I re-create only the 251st project and set up all new projects in
>> CCP4i2 and keep the old projects for use in CCP4i instead?
>>
>>
>> Cheers,
>>
>>
>> Tony
>>
>>
>> ------------------------------------------------------
>>
>>
>>
>>
>>
>>
>> * Dr. Antonio Ariza University of Oxford Sir William Dunn School of
>> Pathology South Parks Road Oxford OX1 3RE*
>> *e-mail: *[log in to unmask]
>> *Tel: 00 +44 1865 285655*
>>
>> *Links to my public profiles:*
>> ResearchGate <https://www.researchgate.net/profile/Antonio_Ariza>
>> LinkedIn <https://www.linkedin.com/in/antonioariza1>
>> GoogleScholar
>> <https://scholar.google.co.uk/citations?user=9pAIKV0AAAAJ&hl=en>
>> Twitter <https://twitter.com/DrAntonioAriza?lang=en>
>>
>> *Check out my latest paper!!!*
>> Structural insights into the function of ZRANB3 in replication stress
>> response <http://www.nature.com/articles/ncomms15847>
>>
>> ------------------------------
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
>>
> --
> Dr Jon Agirre
> Royal Society University Research Fellow
> York Structural Biology Laboratory / Department of Chemistry
> University of York, Heslington, YO10 5DD, York, UK
> http://www.york.ac.uk/chemistry/research/ysbl/people/staff/jagirre/
> Office: /B/K/065 Phone: +44 (0) 1904 32 8252
> Twitter: @alwaysonthejazz
>
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>
> ------------------------------
>
> Date: Mon, 25 Jun 2018 11:59:11 -0700
> From: Oleg Sobolev <[log in to unmask]>
> Subject: Re: refinement papers
>
> Hi Careina,
>
> On behalf of Pavel Afonine:
>
> This (and references inside) may be a start:
>
> http://scripts.iucr.org/cgi-bin/paper?S0907444912001308
>
> Then may be you could reuse some of existing presentations from here
>
> https://www.phenix-online.org/presentations/
>
> Best regards,
> Oleg Sobolev.
>
> On Mon, Jun 25, 2018 at 5:21 AM, Careina Edgooms <
> [log in to unmask]> wrote:
>
>> Hello everyone
>>
>> I am giving talk about refinement and model building. I wonder if anyone
>> knows of latest relevant papers on this topic that you could suggest for me?
>> thank you
>>
>> Careina
>>
>> ------------------------------
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
>>
>
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> ------------------------------
>
> End of CCP4BB Digest - 24 Jun 2018 to 25 Jun 2018 (#2018-154)
> *************************************************************
Mateo Seoane Blanco
PhD student
Dept. of Macromolecular Structures - Lab 20.B
Centro Nacional de Biotecnología - CSIC
C/ Darwin 3, Madrid 28049, Spain
Tel.: (+34) 91 585 4517
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