Dear All,
we are currently setting up a Linux machine with two Nvidia cards and
Cuda for Relion2 and Eman2, CCPEM etc.
After several tries with the current versions of CentOS 7 and Ubuntu
and recent versions of the Cuda toolbox (9.2, 9.1), we had to find out
that there are various dependencies and incompatibilities of what
binaries are available for the different Cuda versions, what can be
installed alongside and what Cuda versions enable a successful
compilation in particular of Relion2.
Another problem we ran into was that the EMAN2 installation interferes
with the compilation of Relion2 by installing conflicting FFTW
libraries.
The Liao lab has published a very helpful and comprehensive protocol
to setup a linux box under Ubuntu 14. However, this distribution will
reach its end of life in less than a year.
It would be great if colleagues would be willing to share their
current configuration and experiences as of what Linux distribution
and what Cuda version(s) they use with the different software
packages, and whether different Cuda versions can be used successfully
alongside.
Thanks,
Clemens
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Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: [log in to unmask]
phone : +49 0931 31 84031
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