Hi Clemens,
> Another problem we ran into was that the EMAN2 installation interferes
> with the compilation of Relion2 by installing conflicting FFTW
> libraries.
You can specify "-DFORCE_OWN_FFTW=ON" in cmake to build
a verified version of FFTW for RELION and link against it.
Same for FLTK (-DFORCE_OWN_FLTK=ON).
I always do this to avoid library problems.
Best regards,
Takanori Nakane
> Dear All,
>
> we are currently setting up a Linux machine with two Nvidia cards and
> Cuda for Relion2 and Eman2, CCPEM etc.
>
> After several tries with the current versions of CentOS 7 and Ubuntu
> and recent versions of the Cuda toolbox (9.2, 9.1), we had to find out
> that there are various dependencies and incompatibilities of what
> binaries are available for the different Cuda versions, what can be
> installed alongside and what Cuda versions enable a successful
> compilation in particular of Relion2.
>
> Another problem we ran into was that the EMAN2 installation interferes
> with the compilation of Relion2 by installing conflicting FFTW
> libraries.
>
> The Liao lab has published a very helpful and comprehensive protocol
> to setup a linux box under Ubuntu 14. However, this distribution will
> reach its end of life in less than a year.
>
> It would be great if colleagues would be willing to share their
> current configuration and experiences as of what Linux distribution
> and what Cuda version(s) they use with the different software
> packages, and whether different Cuda versions can be used successfully
> alongside.
>
> Thanks,
> Clemens
>
> --------------------------------------------------
> Dr. Clemens Grimm
> Institut für Biochemie
> Biozentrum der Universität Würzburg
> Am Hubland
> D-97074 Würzburg
> Germany
> e-mail: [log in to unmask]
> phone : +49 0931 31 84031
> -------------------------------------------------
>
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